Active galactic nuclei synapses: X-ray versus optical classifications using artificial neural networks

(Abridged) Many classes of active galactic nuclei (AGN) have been defined entirely throughout optical wavelengths while the X-ray spectra have been very useful to investigate their inner regions. However, optical and X-ray results show many discrepancies that have not been fully understood yet. The aim of this paper is to study the "synapses" between the X-ray and optical classifications. For the first time, the new EFLUXER task allowed us to analyse broad band X-ray spectra of emission line nuclei (ELN) without any prior spectral fitting using artificial neural networks (ANNs). Our sample comprises 162 XMM-Newton/pn spectra of 90 local ELN in the Palomar sample. It includes starbursts (SB), transition objects (T2), LINERs (L1.8 and L2), and Seyferts (S1, S1.8, and S2). The ANNs are 90% efficient at classifying the trained classes S1, S1.8, and SB. The S1 and S1.8 classes show a wide range of S1- and S1.8-like components. We suggest that this is related to a large degree of obscuration at X-rays. The S1, S1.8, S2, L1.8, L2/T2/SB-AGN (SB with indications of AGN), and SB classes have similar average X-ray spectra within each class, but these average spectra can be distinguished from class to class. The S2 (L1.8) class is linked to the S1.8 (S1) class with larger SB-like component than the S1.8 (S1) class. The L2, T2, and SB-AGN classes conform a class in the X-rays similar to the S2 class albeit with larger fractions of SB-like component. This SB-like component is the contribution of the star-formation in the host galaxy, which is large when the AGN is weak. An AGN-like component seems to be present in the vast majority of the ELN, attending to the non-negligible fraction of S1-like or S1.8-like component. This trained ANN could be used to infer optical properties from X-ray spectra in surveys like eRosita.Comment: 15 pages, 7 figures, accepted for publication in A&A. Appendix B only in the full version of the paper here: https://dl.dropboxusercontent.com/u/3484086/AGNSynapsis_OGM_online.pd

Nanomechanics of graphene oxide-bacteriophage based self-assembled porous composites.

Graphene oxide, integrated with the filamentous bacteriophage M13, forms a 3D large-scale multifunctional porous structure by self-assembly, with considerable potential for applications. We performed Raman spectroscopy under pressure on this porous composite to understand its fundamental mechanics. The results show that at low applied pressure, the [Formula: see text] bonds of graphene oxide stiffen very little with increasing pressure, suggesting a complicated behaviour of water intercalated between the graphene layers. The key message of this paper is that water in a confined space can have a significant impact on the nanostructure that hosts it. We introduced carbon nanotubes during the self-assembly of graphene oxide and M13, and a similar porous macro-structure was observed. However, in the presence of carbon nanotubes, pressure is transmitted to the [Formula: see text] bonds of graphene oxide straightforwardly as in graphite. The electrical conductivity of the composite containing carbon nanotubes is improved by about 30 times at a bias voltage of 10 V. This observation suggests that the porous structure has potential in applications where good electrical conductivity is desired, such as sensors and batteries

Polystyrene Nanopillars with Inbuilt Carbon Nanotubes Enable Synaptic Modulation and Stimulation in Interfaced Neuronal Networks

The use of nanostructured materials and nanosized-topographies has the potential to impact the performance of implantable biodevices, including neural interfaces, enhancing their sensitivity and selectivity, while reducing tissue reactivity. As a result, current trends in biosensor technology require the effective ability to improve devices with controlled nanostructures. Nanoimprint lithography to pattern surfaces with high-density and high aspect ratio nanopillars (NPs) made of polystyrene (PS-NP, insulating), or of a polystyrene/carbon-nanotube nanocomposite (PS-CNT-NP, electrically conductive) are exploited. Both substrates are challenged with cultured primary neurons. They are demonstrated to support the development of suspended synaptic networks at the NPs’ interfaces characterized by a reduction in proliferating neuroglia, and a boost in neuronal emergent electrical activity when compared to flat controls. The authors successfully exploit their conductive PS-CNT-NPs to stimulate cultured cells electrically. The ability of both nanostructured surfaces to interface tissue explants isolated from the mouse spinal cord is then tested. The integration of the neuronal circuits with the NP topology, the suspended nature of the cultured networks, the reduced neuroglia formation, and the higher network activity together with the ability to deliver electrical stimuli via PS-CNT-NP reveal such platforms as promising designs to implement on neuro-prosthetic or neurostimulation devices

Striatal expression of GDNF and differential vulnerability of midbrain dopaminergic cells

Glial cell line-derived neurotrophic factor (GDNF) is a member of the transforming growth factor-beta superfamily that when exogenously administrated exerts a potent trophic action on dopaminergic (DA) cells. Although we know a lot about its signalling mechanisms and pharmacological effects, physiological actions of GDNF on the adult brain remain unclear. Here, we have used morphological and molecular techniques, and an experimental model of Parkinson's disease in rats, to investigate whether GDNF constitutively expressed in the adult mesostriatal system plays a neuroprotective role on midbrain DA cells. We found that although all midbrain DA cells express both receptor components of GDNF (GFRalpha1 and Ret), those in the ventral tegmental area (VTA) and rostromedial substantia nigra (SNrm) also contain GDNF but not GDNFmRNA. The levels of GDNFmRNA are significantly higher in the ventral striatum (vSt), the target region of VTA and SNrm cells, than in the dorsal striatum (dSt), the target region of DA cells in the caudoventral substantia nigra (SNcv). After fluoro-gold injection in striatum, VTA and SNrm DA cells show triple labelling for tyrosine hydroxylase, GDNF and fluoro-gold, and after colchicine injection in the lateral ventricle, they become GDNF-immunonegative, suggesting that GDNF in DA somata comes from their striatal target. As DA cells in VTA and SNrm are more resistant than those in SNcv to intracerebroventricular injection of 6-OHDA, as occurs in Parkinson's disease, we can suggest that the fact that they project to vSt, where GDNF expression is significantly higher than in the dSt, is a neuroprotective factor involved in the differential vulnerability of midbrain DA neurons

Pressure-Driven Symmetry-Preserving Phase Transitions in Co(IO3)(2)

[EN] High-pressure synchrotron X-ray diffraction studies of cobalt iodate, Co(IO3)(2), reveal a counterintuitive pressure-induced expansion along certain crystallographic directions. High-pressure Raman and infrared spectroscopy, combined with density-functional theory calculations, reveal that with increasing pressure, it becomes energetically favorable for certain I-O bonds to increase in length over the full range of pressure studied up to 28 GPa. This phenomenon is driven by the high-pressure behavior of iodate ion lone electron pairs. Two pressure-induced isosymmetric monoclinic-monoclinic phase transitions are observed at around 3.0 and 9.0 GPa, which are characterized by increasing oxygen coordination of the iodine atoms and the probable formation of pressure-induced metavalent bonds. Pressure-volume equations of state are presented, as well as a detailed discussion of the pressure dependences of the observed Raman- and infrared-active modes, which clarifies previous inconsistencies in the literature.This work was supported by the Generalitat Valenciana under Project PROMETEO 2018/123-EFIMAT and by the Spanish Ministerio de Ciencia, Universidades, e Investigacion under Projects PID2019-106383GB-41/42/43, as well as through MALTA Consolider Team research network (RED2018102612-T). A.M. and P.R.-H. acknowledge computing time provided by Red Espan~ola de Supercomputacion (RES) and the MALTA Consolider Team cluster. D.E. acknowledges the resources and technical assistance provided by the Informatics Service of Universitat de Valencia through the Tirant III cluster. A.L. and D.E. would like to thank the Generalitat Valenciana for the Ph.D. Fellowship no. GRISOLIAP/2019/025. R.T. acknowledges funding from the Spanish Ministerio de Economia y Competitividad (MINECO) via the Juan de la Cierva Formacion fellowship (FJC2018-036185-I). C.P. is thankful for the financial support of the Spanish Mineco Project no. FIS2017-83295-P. E.B would like to thank the University of Valencia for his "Attraccio de Talent" postdoctoral contract (UV-INV_POSTDOC19-1026935). The authors thank Sandrine Beauquis from Symme, Universite Savoie Mont Blanc (France), for her technical assistance concerning the SEM and ADX analyses. PXRD experiments were performed at the MSPD beamline of ALBA Synchrotron (experiment no. 2019083663). IR experiments were performed at the MIRAS beamline of ALBA Synchrotron (experiment no. 2020024118).Liang, A.; Popescu, C.; Manjón, F.; Turnbull, R.; Bandiello, E.; Rodriguez-Hernandez, P.; Muñoz, A.... (2021). Pressure-Driven Symmetry-Preserving Phase Transitions in Co(IO3)(2). The Journal of Physical Chemistry C. 125(31):17448-17461. https://doi.org/10.1021/acs.jpcc.1c0465917448174611253

3D Strain in 2D Materials: To What Extent is Monolayer Graphene Graphite?

Previous Raman measurements on supported graphene under high pressure reported a very different shift rate of in-plane phonon frequency of graphene (16 cm$^{-1}$GPa$^{-1}$) from graphite (4.7 cm$^{-1}$GPa$^{-1}$), implying very different in-plane anharmonicity that graphene gets stiffer than graphite in-plane under the same pressure. It was suggested that it could be due to the adhesion of graphene to substrates. We have therefore performed high pressure Raman measurements on unsupported graphene and we find a similar in-plane stiffness and anharmonicity of graphene (5.4 cm$^{-1}$GPa$^{-1}$) to graphite. On the other hand, the out-of-plane stiffness of graphene is hard to define, due to the 2D nature of graphene. However, we estimate a similar out-of-plane stiffness of graphene (1.4$\pm$295 GPa) to that of graphite (38.7$\pm$7 GPa), by measuring its effect on the shift of the in-plane phonon frequency with pressure.Comment: 5 pages, 5 figure

Chemical pressure effects on the spectroscopic properties of Nd3+-doped gallium nano-garnets

[EN] Nd3+-doped RE3Ga5O12 (RE = Gd, Y, and Lu) nano-crystalline garnets of 40-45 nm in size have been synthesized by a sol-gel method. With the decrease of the RE atom size, the chemical pressure related to the decreasing volumes of the GaO4 tetrahedral, GaO6 octahedral and REO8 dodecahedral units drive the nano-garnets toward a more compacted structure, which is evidenced by the change of the vibrational phonon mode frequencies. The chemical pressure also increases the crystal-field strength felt by the RE3+ ions while decreases the orthorhombic distortion of the REO8 local environment. These effects alter the absorption and emission properties of the Nd3+ ion measured in the near-infrared luminescence range from 0.87 to 1.43 ¿m associated with the 4 F3/2¿4 IJ (J = 9/2, 11/2, 13/2) transitions. The 4 F3/2 luminescence decay curves show non-exponential behavior due to dipole-dipole energy transfer interactions among Nd3+ ions that increases with pressure.Authors are grateful to The Governments of Spain and India for the Indo-Spanish Joint Programme of Bilateral Cooperation in Science and Technology (PRI-PIBIN-2011-1153/DST-INT-Spain-P-38-11). Dr. Venkatramu is grateful to DAE-BRNS, Government of India for the award of DAE Research Award for Young Scientist (No. 2010/20/34/5/BRNS/2223). This work have been partially supported by MINECO under The National Program of Materials (MAT2013-46649-C4-2-P/-3-P/-4-P), The Consolider-Ingenio 2010 Program (MALTA CSD2007-00045), by Fundacion CajaCanarias (ENER-01), and by the EU-FEDER funds. V. Monteseguro wishes to thank MICINN for the FPI grant (BES-2011-044596). Authors also thank Agencia Canaria de Investigacion, Innovacion y Sociedad de la Informacion for the funds given to Universidad de La Laguna, co-financed by The European Social Fund by a percentage of 85%.Monteseguro, V.; Rathaiah, M.; Linganna, K.; Lozano-Gorrin, AD.; Hernandez-Rodriguez, MA.; Martin, IR.; Babu, P.... (2015). Chemical pressure effects on the spectroscopic properties of Nd3+-doped gallium nano-garnets. Optical Materials Express. 5(8):1661-1673. https://doi.org/10.1364/OME.5.001661S1661167358Pollnau, M., Hardman, P. ., Clarkson, W. ., & Hanna, D. . (1998). Upconversion, lifetime quenching, and ground-state bleaching in Nd3+:LiYF4. Optics Communications, 147(1-3), 203-211. doi:10.1016/s0030-4018(97)00524-5Brandle, C. D., & Barns, R. L. (1974). Crystal stoichiometry of Czochralski grown rare-earth gallium garnets. Journal of Crystal Growth, 26(1), 169-170. doi:10.1016/0022-0248(74)90223-1Venkatramu, V., Giarola, M., Mariotto, G., Enzo, S., Polizzi, S., Jayasankar, C. K., … Speghini, A. (2010). Nanocrystalline lanthanide-doped Lu3Ga5O12garnets: interesting materials for light-emitting devices. Nanotechnology, 21(17), 175703. doi:10.1088/0957-4484/21/17/175703Speghini, A., Piccinelli, F., & Bettinelli, M. (2011). Synthesis, characterization and luminescence spectroscopy of oxide nanopowders activated with trivalent lanthanide ions: The garnet family. Optical Materials, 33(3), 247-257. doi:10.1016/j.optmat.2010.10.039Krsmanović, R., Morozov, V. A., Lebedev, O. I., Polizzi, S., Speghini, A., Bettinelli, M., & Tendeloo, G. V. (2007). Structural and luminescence investigation on gadolinium gallium garnet nanocrystalline powders prepared by solution combustion synthesis. Nanotechnology, 18(32), 325604. doi:10.1088/0957-4484/18/32/325604Naccache, R., Vetrone, F., Speghini, A., Bettinelli, M., & Capobianco, J. A. (2008). Cross-Relaxation and Upconversion Processes in Pr3+ Singly Doped and Pr3+/Yb3+ Codoped Nanocrystalline Gd3Ga5O12: The Sensitizer/Activator Relationship. The Journal of Physical Chemistry C, 112(20), 7750-7756. doi:10.1021/jp711494dAntic-Fidancev, E., Hölsä, J., Lastusaari, M., & Lupei, A. (2001). Dopant-host relationships in rare-earth oxides and garnets doped with trivalent rare-earth ions. Physical Review B, 64(19). doi:10.1103/physrevb.64.195108Rodríguez-Carvajal, J. (1993). Recent advances in magnetic structure determination by neutron powder diffraction. Physica B: Condensed Matter, 192(1-2), 55-69. doi:10.1016/0921-4526(93)90108-iMonteseguro, V., Rodríguez-Hernández, P., Ortiz, H. M., Venkatramu, V., Manjón, F. J., Jayasankar, C. K., … Muñoz, A. (2015). Structural, elastic and vibrational properties of nanocrystalline lutetium gallium garnet under high pressure. Physical Chemistry Chemical Physics, 17(14), 9454-9464. doi:10.1039/c4cp05903dRay, S., León-Luis, S. F., Manjón, F. J., Mollar, M. A., Gomis, Ó., Rodríguez-Mendoza, U. R., … Lavín, V. (2014). Broadband, site selective and time resolved photoluminescence spectroscopic studies of finely size-modulated Y2O3:Eu3+ phosphors synthesized by a complex based precursor solution method. Current Applied Physics, 14(1), 72-81. doi:10.1016/j.cap.2013.07.027Nekvasil, V. (1978). The Crystal Field for Nd3+ in Garnets. Physica Status Solidi (b), 87(1), 317-323. doi:10.1002/pssb.2220870137Rodríguez-Mendoza, U. R., León-Luis, S. F., Muñoz-Santiuste, J. E., Jaque, D., & Lavín, V. (2013). Nd3+-doped Ca3Ga2Ge3O12garnet: A new optical pressure sensor. Journal of Applied Physics, 113(21), 213517. doi:10.1063/1.4809217Kaminska, A., Buczko, R., Paszkowicz, W., Przybylińska, H., Werner-Malento, E., Suchocki, A., … Saxena, S. (2011). Merging of the4F3/2level states of Nd3+ions in the photoluminescence spectra of gadolinium-gallium garnets under high pressure. Physical Review B, 84(7). doi:10.1103/physrevb.84.075483Allik, T. H., Stewart, S. A., Sardar, D. K., Quarles, G. J., Powell, R. C., Morrison, C. A., … Pinto, A. A. (1988). Preparation, structure, and spectroscopic properties ofNd3+:{La1−xLux}3[Lu1−yGay]2Ga3O12crystals. Physical Review B, 37(16), 9129-9139. doi:10.1103/physrevb.37.9129Wu, K., Yao, B., Zhang, H., Yu, H., Wang, Z., Wang, J., & Jiang, M. (2010). Growth and properties of Nd:Lu3Ga5O12 laser crystal by floating-zone method. Journal of Crystal Growth, 312(24), 3631-3636. doi:10.1016/j.jcrysgro.2010.09.029Jia, Z., Arcangeli, A., Tao, X., Zhang, J., Dong, C., Jiang, M., … Tonelli, M. (2009). Efficient Nd3+→Yb3+ energy transfer in Nd3+,Yb3+:Gd3Ga5O12 multicenter garnet crystal. Journal of Applied Physics, 105(8), 083113. doi:10.1063/1.3115442Guillot-Noel, O., Bellamy, B., Viana, B., & Gourier, D. (1999). Correlation between rare-earth oscillator strengths and rare-earth–valence-band interactions in neodymium-dopedYMO4(M=V,P, As),Y3Al5O12,andLiYF4matrices. Physical Review B, 60(3), 1668-1677. doi:10.1103/physrevb.60.1668Demidovich, A. A., Shkadarevich, A. P., Danailov, M. B., Apai, P., Gasmi, T., Gribkovskii, V. P., … Batay, L. E. (1998). Comparison of cw laser performance of Nd:KGW, Nd:YAG, Nd:BEL, and Nd:YVO 4 under laser diode pumping. Applied Physics B: Lasers and Optics, 67(1), 11-15. doi:10.1007/s003400050467Inokuti, M., & Hirayama, F. (1965). Influence of Energy Transfer by the Exchange Mechanism on Donor Luminescence. The Journal of Chemical Physics, 43(6), 1978-1989. doi:10.1063/1.1697063Lupei, V., & Lupei, A. (2000). Emission dynamics of the4F3/2level ofNd3+in YAG at low pump intensities. Physical Review B, 61(12), 8087-8098. doi:10.1103/physrevb.61.8087Maeda, K., Wada, N., Umino, M., Abe, M., Takada, Y., Nakano, N., & Kuroda, H. (1984). Concentration Dependence of Fluorescence Lifetime of Nd3+-Doped Gd3Ga5O12Lasers. Japanese Journal of Applied Physics, 23(Part 2, No. 10), L759-L760. doi:10.1143/jjap.23.l759Geusic, J. E., Marcos, H. M., & Van Uitert, L. G. (1964). LASER OSCILLATIONS IN Nd‐DOPED YTTRIUM ALUMINUM, YTTRIUM GALLIUM AND GADOLINIUM GARNETS. Applied Physics Letters, 4(10), 182-184. doi:10.1063/1.1753928Löhring, J., Nicklaus, K., Kujath, N., & Hoffmann, D. (2007). Diode pumped Nd:YGG laser for direct generation of pulsed 935 nm radiation for water vapour measurements. Solid State Lasers XVI: Technology and Devices. doi:10.1117/12.708220Maunier, C., Doualan, J. L., Moncorgé, R., Speghini, A., Bettinelli, M., & Cavalli, E. (2002). Growth, spectroscopic characterization, and laser performance of Nd:LuVO_4, a new infrared laser material that is suitable for diode pumping. Journal of the Optical Society of America B, 19(8), 1794. doi:10.1364/josab.19.00179

DEVELOPMENT OF AN ALL-PURPOSE FREE PHOTOGRAMMETRIC TOOL

Photogrammetry is currently facing some challenges and changes mainly related to automation, ubiquitous processing and variety of applications. Within an ISPRS Scientific Initiative a team of researchers from USAL, UCLM, FBK and UNIBO have developed an open photogrammetric tool, called GRAPHOS (inteGRAted PHOtogrammetric Suite). GRAPHOS allows to obtain dense and metric 3D point clouds from terrestrial and UAV images. It encloses robust photogrammetric and computer vision algorithms with the following aims: (i) increase automation, allowing to get dense 3D point clouds through a friendly and easy-to-use interface; (ii) increase flexibility, working with any type of images, scenarios and cameras; (iii) improve quality, guaranteeing high accuracy and resolution; (iv) preserve photogrammetric reliability and repeatability. Last but not least, GRAPHOS has also an educational component reinforced with some didactical explanations about algorithms and their performance. The developments were carried out at different levels: GUI realization, image pre-processing, photogrammetric processing with weight parameters, dataset creation and system evaluation. The paper will present in detail the developments of GRAPHOS with all its photogrammetric components and the evaluation analyses based on various image datasets. GRAPHOS is distributed for free for research and educational needs